V1.5.4 every boot new SSH key generated and Home directory is empty

Hi on a freenas system I upgraded my version 1.4.2 to 1.5.4. Interestingly though when it boots it is like it is booting for the first time.

  1. Connecting via SSH always prompts with a new key.
  2. If I create a file in the home directory upon reboot it is no longer there.

I am assuming there is something wrong in the /usr/share/ros/os-config.yml.

rancher:
  shutdown_timeout: 60
  environment:
    VERSION: v1.5.4
    SUFFIX:
    REGISTRY_DOMAIN: "docker.io"
  defaults:
    hostname: rancher
    docker:
      engine: docker-18.09.8
    network:
      dhcp_timeout: 10
      dns:
        nameservers: [8.8.8.8, 8.8.4.4]
    system_docker_logs: /var/log/system-docker.log
  ssh:
    daemon: true
  hypervisor_service: true
  services_include:
  bootstrap:
    bootstrap:
      image: rancher/os-bootstrap:v1.5.4
      command: ros-bootstrap
      labels:
        io.rancher.os.detach: "false"
        io.rancher.os.scope: system
      log_driver: json-file
      net: none
      privileged: true
      volumes:
      - /dev:/host/dev
      - /lib/modules:/lib/modules
      - /lib/firmware:/lib/firmware
      - /usr/bin/ros:/usr/bin/ros:ro
      - /usr/bin/ros:/usr/bin/ros-bootstrap:ro
      - /usr/share/ros:/usr/share/ros:ro
      - /var/lib/rancher:/var/lib/rancher:ro
      - /var/log:/var/log
  cloud_init_services:
    cloud-init:
      image: rancher/os-base:v1.5.4
      command: cloud-init-save
      labels:
        io.rancher.os.detach: "false"
        io.rancher.os.scope: system
      log_driver: json-file
      net: host
      uts: host
      pid: host
      ipc: host
      privileged: true
      volumes:
      - /etc/resolv.conf:/etc/resolv.conf
      - /dev:/host/dev
      - /etc/ssl/certs/ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt.rancher
      - /lib/modules:/lib/modules
      - /lib/firmware:/lib/firmware
      - /usr/bin/ros:/usr/bin/ros:ro
      - /usr/bin/ros:/usr/bin/cloud-init-save
      - /usr/share/ros:/usr/share/ros:ro
      - /var/lib/rancher:/var/lib/rancher
      - /var/lib/rancher/conf:/var/lib/rancher/conf
      - /var/log:/var/log
  bootstrap_docker:
    bridge: none
    storage_driver: overlay2
    restart: false
    graph: /var/lib/system-docker
    group: root
    host: ["unix:///var/run/system-docker.sock"]
    userland_proxy: false
  console: default
  cloud_init:
    datasources:
    - configdrive:/media/config-2
  repositories:
    core:
      url: https://raw.githubusercontent.com/rancher/os-services/v1.5.4
  state:
    fstype: auto
    oem_fstype: auto
    oem_dev: LABEL=RANCHER_OEM
    boot_fstype: auto
    boot_dev: LABEL=RANCHER_BOOT
    rngd: true
  sysctl:
    fs.file-max: 1000000000
  services:
    command-volumes:
      image: rancher/os-base:v1.5.4
      command: echo
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
      log_driver: json-file
      net: none
      privileged: true
      read_only: true
      volumes:
      - /usr/bin/ros:/usr/bin/ros:ro
      - /usr/bin/system-docker:/usr/bin/system-docker:ro
      - /usr/bin/system-docker-runc:/usr/bin/system-docker-runc:ro
    system-volumes:
      image: rancher/os-base:v1.5.4
      command: echo
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
      log_driver: json-file
      net: none
      privileged: true
      read_only: true
      volumes:
      - /dev:/host/dev
      - /etc/docker:/etc/docker
      - /etc/hosts:/etc/hosts
      - /etc/logrotate.d:/etc/logrotate.d
      - /etc/resolv.conf:/etc/resolv.conf
      - /etc/ssl/certs/ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt.rancher
      - /etc/selinux:/etc/selinux
      - /lib/firmware:/lib/firmware
      - /lib/modules:/lib/modules
      - /run:/run
      - /usr/share/ros:/usr/share/ros
      - /var/lib/boot2docker:/var/lib/boot2docker
      - /var/lib/rancher/cache:/var/lib/rancher/cache
      - /var/lib/rancher/conf:/var/lib/rancher/conf
      - /var/lib/rancher:/var/lib/rancher
      - /var/lib/waagent:/var/lib/waagent
      - /var/log:/var/log
      - /var/run:/var/run
    container-data-volumes:
      image: rancher/os-base:v1.5.4
      command: echo
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
      log_driver: json-file
      net: none
      privileged: true
      read_only: true
      volumes:
      - /var/lib/user-docker:/var/lib/docker
      - /var/lib/m-user-docker:/var/lib/m-user-docker
    user-volumes:
      image: rancher/os-base:v1.5.4
      command: echo
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
      log_driver: json-file
      net: none
      privileged: true
      read_only: true
      volumes:
      - /home:/home
      - /opt:/opt
      - /var/lib/kubelet:/var/lib/kubelet
    media-volumes:
      image: rancher/os-base:v1.5.4
      command: echo
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
      log_driver: json-file
      net: none
      privileged: true
      read_only: true
      volumes:
      - /media:/media:shared
      - /mnt:/mnt:shared
    all-volumes:
      image: rancher/os-base:v1.5.4
      command: echo
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
        io.docker.compose.rebuild: always
      log_driver: json-file
      net: none
      privileged: true
      read_only: true
      volumes_from:
      - container-data-volumes
      - command-volumes
      - media-volumes
      - user-volumes
      - system-volumes
    acpid:
      image: rancher/os-acpid:v1.5.4
      command: /usr/sbin/acpid -f
      labels:
        io.rancher.os.scope: system
      net: host
      uts: host
      privileged: true
      volumes_from:
      - command-volumes
      - system-volumes
    cloud-init-execute:
      image: rancher/os-base:v1.5.4
      command: cloud-init-execute -pre-console
      labels:
        io.rancher.os.detach: "false"
        io.rancher.os.scope: system
        io.rancher.os.after: ntp
      net: host
      uts: host
      privileged: true
      volumes_from:
      - system-volumes
      volumes:
      - /usr/bin/ros:/usr/bin/ros:ro
    console:
      image: rancher/os-console:v1.5.4
      command: ros console-init
      labels:
        io.rancher.os.scope: system
        io.rancher.os.after: cloud-init-execute
        io.docker.compose.rebuild: always
        io.rancher.os.console: default
      environment:
      - HTTP_PROXY
      - HTTPS_PROXY
      - NO_PROXY
      net: host
      uts: host
      pid: host
      ipc: host
      privileged: true
      restart: always
      volumes_from:
      - all-volumes
      volumes:
      - /usr/bin/iptables:/sbin/iptables:ro
    logrotate:
      image: rancher/os-logrotate:v1.5.4
      command: /usr/sbin/logrotate -v /etc/logrotate.conf
      labels:
        io.rancher.os.createonly: "true"
        io.rancher.os.scope: system
        io.rancher.os.before: system-cron
        cron.schedule: "@hourly"
      uts: host
      net: none
      privileged: true
      volumes_from:
      - command-volumes
      - system-volumes
    network:
      image: rancher/os-base:v1.5.4
      command: netconf
      labels:
        io.rancher.os.scope: system
        io.rancher.os.after: udev
        io.rancher.os.reloadconfig: "true"
      net: host
      uts: host
      pid: host
      privileged: true
      volumes_from:
      - system-volumes
      - command-volumes
      volumes:
      - /usr/bin/iptables:/sbin/iptables:ro
    ntp:
      image: rancher/os-base:v1.5.4
      command: /bin/start_ntp.sh
      labels:
        io.rancher.os.scope: system
        io.rancher.os.after: network
      net: host
      uts: host
      privileged: true
      restart: always
      volumes_from:
      - command-volumes
      - system-volumes
    preload-user-images:
      image: rancher/os-base:v1.5.4
      command: ros preload-images
      net: host
      labels:
        io.rancher.os.detach: "false"
        io.rancher.os.scope: system
        io.rancher.os.after: console
      privileged: true
      volumes_from:
      - command-volumes
      - system-volumes
    syslog:
      image: rancher/os-syslog:v1.5.4
      command: rsyslogd -n
      labels:
        io.rancher.os.scope: system
      log_driver: json-file
      net: host
      uts: host
      privileged: true
      restart: always
      volumes_from:
      - command-volumes
      - system-volumes
    system-cron:
      image: rancher/container-crontab:v0.4.0
      labels:
        io.rancher.os.scope: system
      uts: host
      net: none
      privileged: true
      restart: always
      volumes:
      - /var/run/system-docker.sock:/var/run/docker.sock
      environment:
        DOCKER_API_VERSION: "1.22"
    udev-cold:
      image: rancher/os-base:v1.5.4
      command: ros udev-settle
      labels:
        io.rancher.os.detach: "false"
        io.rancher.os.scope: system
      net: host
      uts: host
      privileged: true
      volumes_from:
      - command-volumes
      - system-volumes
    udev:
      image: rancher/os-base:v1.5.4
      command: udevd
      labels:
        io.rancher.os.detach: "true"
        io.rancher.os.scope: system
        io.rancher.os.after: udev-cold
      net: host
      uts: host
      privileged: true
      restart: always
      volumes_from:
      - command-volumes
      - system-volumes
    docker:
      image: rancher/os-docker:18.09.8
      command: ros user-docker
      environment:
      - HTTP_PROXY
      - HTTPS_PROXY
      - NO_PROXY
      labels:
        io.rancher.os.scope: system
        io.rancher.os.after: console
      net: host
      pid: host
      ipc: host
      uts: host
      privileged: true
      restart: always
      volumes_from:
      - all-volumes
      volumes:
      - /sys:/host/sys
      - /var/lib/system-docker:/var/lib/system-docker:shared
    subscriber:
      image: rancher/os-base:v1.5.4
      command: os-subscriber
      environment:
      - IN_DOCKER=true
      labels:
        io.rancher.os.scope: system
        io.rancher.os.after: console
        cron.schedule: "0 0 3 * * ?"
      privileged: true
      pid: host
      ipc: host
      net: host
      uts: host
      volumes_from:
      - command-volumes
      - system-volumes
      volumes:
      - /sys:/host/sys
  system_docker:
    exec: true
    storage_driver: overlay2
    bip: 172.18.42.1/16
    restart: false
    graph: /var/lib/system-docker
    group: root
    host: ["unix:///var/run/system-docker.sock"]
    pid_file: /var/run/system-docker.pid
    exec_root: /var/run/system-docker
    config_file: /etc/docker/system-docker.json
    userland_proxy: false
    log_opts:
      max-size: 25m
      max-file: 2
  upgrade:
    url: https://releases.rancher.com/os/releases.yml
    image: rancher/os
    policy: download
  docker:
    engine: docker-18.09.8
    group: docker
    host: ["unix:///var/run/docker.sock"]
    log_opts:
      max-size: 25m
      max-file: 2
    tls_args: [--tlsverify, --tlscacert=/etc/docker/tls/ca.pem, --tlscert=/etc/docker/tls/server-cert.pem, --tlskey=/etc/docker/tls/server-key.pem,
      '-H=0.0.0.0:2376']

Any advice where to start troubleshooting this is greatly appreciated.